PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.286080.1
Common NameCsa_5G601530, LOC101215974
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 474aa    MW: 53435.8 Da    PI: 5.3073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.286080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-10290336455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ + ErrRR++i++++ +Lr l+P+ +      K++ a+i   A+ YI++L+
  Cucsa.286080.1 290 KNLMTERRRRNKIRDRLYTLRALVPNiS------KMDRASIIVDAIGYIRELE 336
                     55689*********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-1511157IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.57E-15285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15288352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-8290336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.31E-4408470No hitNo description
Gene3DG3DSA:3.30.70.2600.001408471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MRSFEEALEF LRPLVEIKLW DYCIVWKSRD DDSLRFIDWV GCCCSGGVSG AGGKEEAGET  60
IPAALCKDTR FRHFRRTNAC QALAQFPSSI SLNTGVHGDV SISNQPMWLT SGEVSYFSSF  120
SHELTGTRVL IPVSGGIVEL FATKRMPREG EVIDFVMAHC NFSLEQEFET ESALNAGLNE  180
KILNSSTKYY SLNWPDPQAI LGFKSKLETL PSVSQSSSFP GCGEGSSSGS KPSPGLFNQP  240
IRTSFESKAG MRQEDLLEQQ RNVVLDHSKI LQKDEAKTGE KQEKEVYKSK NLMTERRRRN  300
KIRDRLYTLR ALVPNISKMD RASIIVDAIG YIRELEENVK SLQNELIQLE HKDCQKNKHL  360
KVSPLEKTND DIDSWPFVQD DQPMFILDEE KPMEVEVEVM QINERDFLIK LFCKQKQGGV  420
VSSIEAMDSL GLQVIDVNIT TFGGMVLNIF HVEANENDIQ PKRLRDSLIK LTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135248.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A0A0KQ910.0A0A0A0KQ91_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-66bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]